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Bipartite invariance in mouse primary visual cortex

View ORCID ProfileZhiwei Ding, Dat T. Tran, View ORCID ProfileKayla Ponder, View ORCID ProfileZhuokun Ding, Rachel Froebe, Lydia Ntanavara, View ORCID ProfilePaul G. Fahey, Erick Cobos, View ORCID ProfileLuca Baroni, View ORCID ProfileMaria Diamantaki, View ORCID ProfileEric Y. Wang, View ORCID ProfileAndersen Chang, View ORCID ProfileStelios Papadopoulos, View ORCID ProfileJiakun Fu, Taliah Muhammad, View ORCID ProfileChristos Papadopoulos, Santiago A. Cadena, Alexandros Evangelou, View ORCID ProfileKonstantin Willeke, View ORCID ProfileFabio Anselmi, View ORCID ProfileSophia Sanborn, View ORCID ProfileJan Antolik, View ORCID ProfileEmmanouil Froudarakis, View ORCID ProfileSaumil Patel, View ORCID ProfileEdgar Y. Walker, View ORCID ProfileJacob Reimer, View ORCID ProfileFabian H. Sinz, View ORCID ProfileAlexander S. Ecker, View ORCID ProfileKatrin Franke, View ORCID ProfileXaq Pitkow, View ORCID ProfileAndreas S. Tolias
doi: https://doi.org/10.1101/2023.03.15.532836
Zhiwei Ding
1Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
2Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
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Dat T. Tran
1Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
2Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
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Kayla Ponder
1Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
2Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
3Department of Ophthalmology, Byers Eye Institute, Stanford University School of Medicine, Stanford, CA, US
4Stanford Bio-X, Stanford University, Stanford, CA, USA
5Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA, USA
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Zhuokun Ding
1Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
2Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
3Department of Ophthalmology, Byers Eye Institute, Stanford University School of Medicine, Stanford, CA, US
4Stanford Bio-X, Stanford University, Stanford, CA, USA
5Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA, USA
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Rachel Froebe
1Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
2Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
3Department of Ophthalmology, Byers Eye Institute, Stanford University School of Medicine, Stanford, CA, US
4Stanford Bio-X, Stanford University, Stanford, CA, USA
5Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA, USA
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Lydia Ntanavara
1Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
2Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
3Department of Ophthalmology, Byers Eye Institute, Stanford University School of Medicine, Stanford, CA, US
4Stanford Bio-X, Stanford University, Stanford, CA, USA
5Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA, USA
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Paul G. Fahey
1Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
2Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
3Department of Ophthalmology, Byers Eye Institute, Stanford University School of Medicine, Stanford, CA, US
4Stanford Bio-X, Stanford University, Stanford, CA, USA
5Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA, USA
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Erick Cobos
1Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
2Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
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Luca Baroni
6Charles University, Prague, Czech Republic
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Maria Diamantaki
7Institute of Molecular Biology & Biotechnology, Foundation of Research & Technology - Hellas, Heraklion, Crete, Greece
8School of Medicine, University of Crete, Heraklion, Crete, Greece
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Eric Y. Wang
1Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
2Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
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Andersen Chang
1Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
2Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
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Stelios Papadopoulos
1Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
2Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
3Department of Ophthalmology, Byers Eye Institute, Stanford University School of Medicine, Stanford, CA, US
4Stanford Bio-X, Stanford University, Stanford, CA, USA
5Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA, USA
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Jiakun Fu
1Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
2Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
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Taliah Muhammad
1Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
2Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
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Christos Papadopoulos
1Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
2Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
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Santiago A. Cadena
9Institute of Computer Science and Campus Institute Data Science, University of Göttingen, Göttingen, Germany
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Alexandros Evangelou
7Institute of Molecular Biology & Biotechnology, Foundation of Research & Technology - Hellas, Heraklion, Crete, Greece
8School of Medicine, University of Crete, Heraklion, Crete, Greece
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Konstantin Willeke
3Department of Ophthalmology, Byers Eye Institute, Stanford University School of Medicine, Stanford, CA, US
4Stanford Bio-X, Stanford University, Stanford, CA, USA
5Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA, USA
9Institute of Computer Science and Campus Institute Data Science, University of Göttingen, Göttingen, Germany
10Institute for Bioinformatics and Medical Informatics, University of Tübingen, Tübingen, Germany
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Fabio Anselmi
11Department of Mathematics, Informatics and Geoscience, University of Trieste, Trieste, Italy
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Sophia Sanborn
3Department of Ophthalmology, Byers Eye Institute, Stanford University School of Medicine, Stanford, CA, US
4Stanford Bio-X, Stanford University, Stanford, CA, USA
5Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA, USA
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Jan Antolik
6Charles University, Prague, Czech Republic
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Emmanouil Froudarakis
7Institute of Molecular Biology & Biotechnology, Foundation of Research & Technology - Hellas, Heraklion, Crete, Greece
8School of Medicine, University of Crete, Heraklion, Crete, Greece
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Saumil Patel
1Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
2Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
3Department of Ophthalmology, Byers Eye Institute, Stanford University School of Medicine, Stanford, CA, US
4Stanford Bio-X, Stanford University, Stanford, CA, USA
5Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA, USA
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Edgar Y. Walker
12Department of Physiology and Biophysics, University of Washington, Seattle, WA, USA
13Computational Neuroscience Center, University of Washington, Seattle, WA, USA
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Jacob Reimer
1Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
2Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
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Fabian H. Sinz
1Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
2Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
9Institute of Computer Science and Campus Institute Data Science, University of Göttingen, Göttingen, Germany
10Institute for Bioinformatics and Medical Informatics, University of Tübingen, Tübingen, Germany
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Alexander S. Ecker
9Institute of Computer Science and Campus Institute Data Science, University of Göttingen, Göttingen, Germany
14Max Planck Institute for Dynamics and Self-Organization, Göttingen, Germany
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Katrin Franke
1Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
2Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
3Department of Ophthalmology, Byers Eye Institute, Stanford University School of Medicine, Stanford, CA, US
4Stanford Bio-X, Stanford University, Stanford, CA, USA
5Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA, USA
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Xaq Pitkow
1Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
2Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
15Department of Electrical and Computer Engineering, Rice University, Houston, TX, USA
16Department of Computer Science, Rice University, Houston, TX, USA
17Neuroscience Institute, Carnegie Mellon University, Pittsburgh, PA, USA
18Department of Machine Learning, Carnegie Mellon University, Pittsburgh, PA, USA
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Andreas S. Tolias
1Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, TX, USA
2Department of Neuroscience, Baylor College of Medicine, Houston, TX, USA
3Department of Ophthalmology, Byers Eye Institute, Stanford University School of Medicine, Stanford, CA, US
4Stanford Bio-X, Stanford University, Stanford, CA, USA
5Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA, USA
19Department of Electrical Engineering, Stanford University, Stanford, CA, USA
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  • For correspondence: tolias{at}stanford.edu
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Abstract

A primary goal of sensory systems is to extract robust and meaningful features that are invariant to variations in the sensory input. Characterizing these invariances at the neuronal level is crucial for understanding how the visual system supports generalization, but the high-dimensional nature of ecological stimuli poses major challenges. Consequently, our understanding of how the brain represents invariances has historically depended on a few examples, such as phase invariance to grating stimuli in V1 complex cells. Here, we leverage the inception loop paradigm —iterating between large-scale recordings, deep learning neuronal predictive models, and in silico experiments with in vivo verification—to characterize neuronal invariances in mouse V1. Using a neuronal predictive model, we synthesized Diverse Exciting Inputs (DEIs) that strongly drive target neurons while differing substantially in image space. These DEIs revealed a novel bipartite invariance: one portion of the receptive field encodes shift-invariant, high-frequency textures, while the other encodes a fixed, low-frequency spatial pattern. This subfield division aligned with object boundaries defined by spatial frequency differences in highly activating stimuli, suggesting bi-partite invariance contributes to segmentation. Our analysis of computational models and anatomical data from the MICrONS dataset revealed a hierarchical organization of excitatory neurons in mouse V1 Layers 2/3: We found that postsynaptic neurons exhibited greater invariance than their presynaptic inputs, while neurons with lower invariance formed more connections. These findings suggest a synaptic-level hierarchy that progressively increases neural invariance within the primary visual cortex. Intriguingly, similar high-low frequency bipartite patterns strongly activate certain units in artificial neural networks, suggesting that universal visual representations govern both biological and artificial systems, potentially aiding in the extraction of visual features from complex backgrounds.

Competing Interest Statement

XP is a co-founder of Upload AI, LLC, a company in which he has financial interests. AST is a co-founder of Vathes Inc., and UploadAI LLC companies in which he has financial interests. JR is a co-founder of Vathes Inc., and UploadAI LLC companies in which he has financial interests.

Footnotes

  • Performed additional closed-loop experiments and analyses to verify in vivo activation of individual DEIs (Fig. 2); Demonstrated the robustness of our DEI synthesis methodology (Fig. 3); Introduced a quantification metric of the bipartite phase invariance (Fig. 4); Included more rigorous analyses on the RF subfield spatial frequency bias (Fig. 5); Added new analyses of the functional-connectomics MICrONS data (Fig. 6); Added new analyses from electrophysiological data to strengthen our findings from the two-photon imaging data; Conducted a series of additional control experiments to rule out alternative explanations for the bipartite RF structure; Updated supplementary material

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Bipartite invariance in mouse primary visual cortex
Zhiwei Ding, Dat T. Tran, Kayla Ponder, Zhuokun Ding, Rachel Froebe, Lydia Ntanavara, Paul G. Fahey, Erick Cobos, Luca Baroni, Maria Diamantaki, Eric Y. Wang, Andersen Chang, Stelios Papadopoulos, Jiakun Fu, Taliah Muhammad, Christos Papadopoulos, Santiago A. Cadena, Alexandros Evangelou, Konstantin Willeke, Fabio Anselmi, Sophia Sanborn, Jan Antolik, Emmanouil Froudarakis, Saumil Patel, Edgar Y. Walker, Jacob Reimer, Fabian H. Sinz, Alexander S. Ecker, Katrin Franke, Xaq Pitkow, Andreas S. Tolias
bioRxiv 2023.03.15.532836; doi: https://doi.org/10.1101/2023.03.15.532836
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Bipartite invariance in mouse primary visual cortex
Zhiwei Ding, Dat T. Tran, Kayla Ponder, Zhuokun Ding, Rachel Froebe, Lydia Ntanavara, Paul G. Fahey, Erick Cobos, Luca Baroni, Maria Diamantaki, Eric Y. Wang, Andersen Chang, Stelios Papadopoulos, Jiakun Fu, Taliah Muhammad, Christos Papadopoulos, Santiago A. Cadena, Alexandros Evangelou, Konstantin Willeke, Fabio Anselmi, Sophia Sanborn, Jan Antolik, Emmanouil Froudarakis, Saumil Patel, Edgar Y. Walker, Jacob Reimer, Fabian H. Sinz, Alexander S. Ecker, Katrin Franke, Xaq Pitkow, Andreas S. Tolias
bioRxiv 2023.03.15.532836; doi: https://doi.org/10.1101/2023.03.15.532836

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